Dec 03 05:57:47.016 INFO testing heme-0.3.1 against master#8940af3cea4a9a9deabcaf843b2f8cad9a83fc61 for beta-1.31-5
Dec 03 05:57:47.016 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.31-5/worker-6/master#8940af3cea4a9a9deabcaf843b2f8cad9a83fc61:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-6/beta-1.31-5/master#8940af3cea4a9a9deabcaf843b2f8cad9a83fc61:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +8940af3cea4a9a9deabcaf843b2f8cad9a83fc61-alt build --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Dec 03 05:57:47.552 INFO [stdout] bbe00115947120ff4cca0d0dc4644372174b8f3c343e1a711ddbe9adb1129aa2
Dec 03 05:57:47.555 INFO running `"docker" "start" "-a" "bbe00115947120ff4cca0d0dc4644372174b8f3c343e1a711ddbe9adb1129aa2"`
Dec 03 05:57:49.543 INFO [stderr] usermod: no changes
Dec 03 05:57:49.631 INFO [stderr]    Compiling heme v0.3.1 (/source)
Dec 03 05:57:50.368 INFO [stderr] warning: unused import: `std::collections::HashMap`
Dec 03 05:57:50.368 INFO [stderr]  --> src/sampling.rs:1:5
Dec 03 05:57:50.369 INFO [stderr]   |
Dec 03 05:57:50.369 INFO [stderr] 1 | use std::collections::HashMap; 
Dec 03 05:57:50.369 INFO [stderr]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
Dec 03 05:57:50.369 INFO [stderr]   |
Dec 03 05:57:50.369 INFO [stderr]   = note: #[warn(unused_imports)] on by default
Dec 03 05:57:50.369 INFO [stderr] 
Dec 03 05:57:50.430 INFO [stderr] warning: unused variable: `protocol_name`
Dec 03 05:57:50.430 INFO [stderr]   --> src/sampling.rs:20:21
Dec 03 05:57:50.430 INFO [stderr]    |
Dec 03 05:57:50.430 INFO [stderr] 20 | pub fn get_protocol(protocol_name: &str) -> Protocol {
Dec 03 05:57:50.430 INFO [stderr]    |                     ^^^^^^^^^^^^^ help: consider using `_protocol_name` instead
Dec 03 05:57:50.430 INFO [stderr]    |
Dec 03 05:57:50.430 INFO [stderr]    = note: #[warn(unused_variables)] on by default
Dec 03 05:57:50.430 INFO [stderr] 
Dec 03 05:57:50.430 INFO [stderr] warning: unused variable: `a1`
Dec 03 05:57:50.430 INFO [stderr]   --> src/scoring.rs:24:39
Dec 03 05:57:50.430 INFO [stderr]    |
Dec 03 05:57:50.430 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Dec 03 05:57:50.430 INFO [stderr]    |                                       ^^ help: consider using `_a1` instead
Dec 03 05:57:50.430 INFO [stderr] 
Dec 03 05:57:50.430 INFO [stderr] warning: unused variable: `a2`
Dec 03 05:57:50.430 INFO [stderr]   --> src/scoring.rs:24:50
Dec 03 05:57:50.430 INFO [stderr]    |
Dec 03 05:57:50.430 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Dec 03 05:57:50.430 INFO [stderr]    |                                                  ^^ help: consider using `_a2` instead
Dec 03 05:57:50.430 INFO [stderr] 
Dec 03 05:57:50.448 INFO [stderr] warning: field is never used: `atoms`
Dec 03 05:57:50.448 INFO [stderr]   --> src/conformation.rs:52:5
Dec 03 05:57:50.448 INFO [stderr]    |
Dec 03 05:57:50.448 INFO [stderr] 52 |     atoms: Vec<Atom>,
Dec 03 05:57:50.448 INFO [stderr]    |     ^^^^^^^^^^^^^^^^
Dec 03 05:57:50.448 INFO [stderr]    |
Dec 03 05:57:50.448 INFO [stderr]    = note: #[warn(dead_code)] on by default
Dec 03 05:57:50.449 INFO [stderr] 
Dec 03 05:57:50.449 INFO [stderr] warning: field is never used: `residue_name`
Dec 03 05:57:50.449 INFO [stderr]   --> src/conformation.rs:53:5
Dec 03 05:57:50.449 INFO [stderr]    |
Dec 03 05:57:50.449 INFO [stderr] 53 |     residue_name: String,
Dec 03 05:57:50.449 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
Dec 03 05:57:50.449 INFO [stderr] 
Dec 03 05:57:50.449 INFO [stderr] warning: field is never used: `residue_index`
Dec 03 05:57:50.449 INFO [stderr]   --> src/conformation.rs:54:5
Dec 03 05:57:50.449 INFO [stderr]    |
Dec 03 05:57:50.449 INFO [stderr] 54 |     residue_index: i32,
Dec 03 05:57:50.449 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^
Dec 03 05:57:50.449 INFO [stderr] 
Dec 03 05:57:52.416 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2.84s
Dec 03 05:57:52.421 INFO [stderr] su: No module specific data is present
Dec 03 05:57:53.362 INFO running `"docker" "inspect" "bbe00115947120ff4cca0d0dc4644372174b8f3c343e1a711ddbe9adb1129aa2"`
Dec 03 05:57:53.583 INFO running `"docker" "rm" "-f" "bbe00115947120ff4cca0d0dc4644372174b8f3c343e1a711ddbe9adb1129aa2"`
Dec 03 05:57:53.887 INFO [stdout] bbe00115947120ff4cca0d0dc4644372174b8f3c343e1a711ddbe9adb1129aa2
Dec 03 05:57:53.895 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.31-5/worker-6/master#8940af3cea4a9a9deabcaf843b2f8cad9a83fc61:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-6/beta-1.31-5/master#8940af3cea4a9a9deabcaf843b2f8cad9a83fc61:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +8940af3cea4a9a9deabcaf843b2f8cad9a83fc61-alt test --frozen --no-run" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Dec 03 05:57:54.457 INFO [stdout] 842083961fc7daed30da2ac7ca79e1986fac6053505558a5bf0c61e3a020ba2a
Dec 03 05:57:54.459 INFO running `"docker" "start" "-a" "842083961fc7daed30da2ac7ca79e1986fac6053505558a5bf0c61e3a020ba2a"`
Dec 03 05:57:56.467 INFO [stderr] usermod: no changes
Dec 03 05:57:56.532 INFO [stderr]    Compiling heme v0.3.1 (/source)
Dec 03 05:57:57.699 INFO [stderr] warning: unused import: `std::collections::HashMap`
Dec 03 05:57:57.699 INFO [stderr]  --> src/sampling.rs:1:5
Dec 03 05:57:57.699 INFO [stderr]   |
Dec 03 05:57:57.699 INFO [stderr] 1 | use std::collections::HashMap; 
Dec 03 05:57:57.699 INFO [stderr]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
Dec 03 05:57:57.699 INFO [stderr]   |
Dec 03 05:57:57.699 INFO [stderr]   = note: #[warn(unused_imports)] on by default
Dec 03 05:57:57.699 INFO [stderr] 
Dec 03 05:57:58.015 INFO [stderr] warning: unused variable: `protocol_name`
Dec 03 05:57:58.015 INFO [stderr]   --> src/sampling.rs:20:21
Dec 03 05:57:58.015 INFO [stderr]    |
Dec 03 05:57:58.015 INFO [stderr] 20 | pub fn get_protocol(protocol_name: &str) -> Protocol {
Dec 03 05:57:58.015 INFO [stderr]    |                     ^^^^^^^^^^^^^ help: consider using `_protocol_name` instead
Dec 03 05:57:58.015 INFO [stderr]    |
Dec 03 05:57:58.015 INFO [stderr]    = note: #[warn(unused_variables)] on by default
Dec 03 05:57:58.015 INFO [stderr] 
Dec 03 05:57:58.015 INFO [stderr] warning: unused variable: `a1`
Dec 03 05:57:58.015 INFO [stderr]   --> src/scoring.rs:24:39
Dec 03 05:57:58.015 INFO [stderr]    |
Dec 03 05:57:58.015 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Dec 03 05:57:58.015 INFO [stderr]    |                                       ^^ help: consider using `_a1` instead
Dec 03 05:57:58.015 INFO [stderr] 
Dec 03 05:57:58.015 INFO [stderr] warning: unused variable: `a2`
Dec 03 05:57:58.015 INFO [stderr]   --> src/scoring.rs:24:50
Dec 03 05:57:58.015 INFO [stderr]    |
Dec 03 05:57:58.015 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Dec 03 05:57:58.015 INFO [stderr]    |                                                  ^^ help: consider using `_a2` instead
Dec 03 05:57:58.015 INFO [stderr] 
Dec 03 05:57:58.100 INFO [stderr] warning: field is never used: `atoms`
Dec 03 05:57:58.100 INFO [stderr]   --> src/conformation.rs:52:5
Dec 03 05:57:58.100 INFO [stderr]    |
Dec 03 05:57:58.100 INFO [stderr] 52 |     atoms: Vec<Atom>,
Dec 03 05:57:58.100 INFO [stderr]    |     ^^^^^^^^^^^^^^^^
Dec 03 05:57:58.100 INFO [stderr]    |
Dec 03 05:57:58.100 INFO [stderr]    = note: #[warn(dead_code)] on by default
Dec 03 05:57:58.100 INFO [stderr] 
Dec 03 05:57:58.100 INFO [stderr] warning: field is never used: `residue_name`
Dec 03 05:57:58.100 INFO [stderr]   --> src/conformation.rs:53:5
Dec 03 05:57:58.100 INFO [stderr]    |
Dec 03 05:57:58.100 INFO [stderr] 53 |     residue_name: String,
Dec 03 05:57:58.100 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
Dec 03 05:57:58.101 INFO [stderr] 
Dec 03 05:57:58.101 INFO [stderr] warning: field is never used: `residue_index`
Dec 03 05:57:58.101 INFO [stderr]   --> src/conformation.rs:54:5
Dec 03 05:57:58.101 INFO [stderr]    |
Dec 03 05:57:58.101 INFO [stderr] 54 |     residue_index: i32,
Dec 03 05:57:58.101 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^
Dec 03 05:57:58.101 INFO [stderr] 
Dec 03 05:57:58.127 INFO [stderr] warning: function `H` should have a snake case name such as `h`
Dec 03 05:57:58.127 INFO [stderr]    --> src/io.rs:152:9
Dec 03 05:57:58.127 INFO [stderr]     |
Dec 03 05:57:58.127 INFO [stderr] 152 | /         fn H(l: &f64) -> f64 {
Dec 03 05:57:58.127 INFO [stderr] 153 | |
Dec 03 05:57:58.127 INFO [stderr] 154 | |             // bounds of N choose lN
Dec 03 05:57:58.135 INFO [stderr] 155 | |             // can be found by 2^(n*H(l))
Dec 03 05:57:58.135 INFO [stderr] ...   |
Dec 03 05:57:58.135 INFO [stderr] 161 | |             l.ln() - value * value.ln()
Dec 03 05:57:58.135 INFO [stderr] 162 | |         }
Dec 03 05:57:58.135 INFO [stderr]     | |_________^
Dec 03 05:57:58.135 INFO [stderr]     |
Dec 03 05:57:58.135 INFO [stderr]     = note: #[warn(non_snake_case)] on by default
Dec 03 05:57:58.135 INFO [stderr] 
Dec 03 05:57:59.045 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2.55s
Dec 03 05:57:59.048 INFO [stderr] su: No module specific data is present
Dec 03 05:58:00.073 INFO running `"docker" "inspect" "842083961fc7daed30da2ac7ca79e1986fac6053505558a5bf0c61e3a020ba2a"`
Dec 03 05:58:00.387 INFO running `"docker" "rm" "-f" "842083961fc7daed30da2ac7ca79e1986fac6053505558a5bf0c61e3a020ba2a"`
Dec 03 05:58:00.687 INFO [stdout] 842083961fc7daed30da2ac7ca79e1986fac6053505558a5bf0c61e3a020ba2a
Dec 03 05:58:00.695 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.31-5/worker-6/master#8940af3cea4a9a9deabcaf843b2f8cad9a83fc61:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-6/beta-1.31-5/master#8940af3cea4a9a9deabcaf843b2f8cad9a83fc61:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +8940af3cea4a9a9deabcaf843b2f8cad9a83fc61-alt test --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Dec 03 05:58:01.135 INFO [stdout] e9bf6474485d1f5499cc7b78e72a9db924a05a677f64a374abb8db5e411446fa
Dec 03 05:58:01.139 INFO running `"docker" "start" "-a" "e9bf6474485d1f5499cc7b78e72a9db924a05a677f64a374abb8db5e411446fa"`
Dec 03 05:58:02.321 INFO [stderr] usermod: no changes
Dec 03 05:58:02.356 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.01s
Dec 03 05:58:02.359 INFO [stderr]      Running /target/debug/deps/heme-7eb9188529727445
Dec 03 05:58:02.375 INFO [stdout] 
Dec 03 05:58:02.375 INFO [stdout] running 4 tests
Dec 03 05:58:02.375 INFO [stdout] test io::tests::test_entropy_function ... ok
Dec 03 05:58:02.375 INFO [stdout] test io::tests::test_pdb_parsing ... ok
Dec 03 05:58:02.375 INFO [stdout] test io::tests::test_new_atoms_testy ... ok
Dec 03 05:58:02.375 INFO [stdout] test io::tests::test_lennard_jones_atom_loading ... ok
Dec 03 05:58:02.375 INFO [stdout] 
Dec 03 05:58:02.375 INFO [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Dec 03 05:58:02.375 INFO [stdout] 
Dec 03 05:58:02.375 INFO [stderr]      Running /target/debug/deps/heme-cb92e3fa3b66152c
Dec 03 05:58:02.380 INFO [stdout] 
Dec 03 05:58:02.380 INFO [stdout] running 0 tests
Dec 03 05:58:02.387 INFO [stderr]    Doc-tests heme
Dec 03 05:58:02.387 INFO [stdout] 
Dec 03 05:58:02.387 INFO [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Dec 03 05:58:02.387 INFO [stdout] 
Dec 03 05:58:03.438 INFO [stdout] 
Dec 03 05:58:03.438 INFO [stdout] running 1 test
Dec 03 05:58:04.706 INFO [stdout] test src/conformation.rs - conformation::XYZ (line 18) ... ok
Dec 03 05:58:04.706 INFO [stdout] 
Dec 03 05:58:04.706 INFO [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Dec 03 05:58:04.706 INFO [stdout] 
Dec 03 05:58:04.715 INFO [stderr] su: No module specific data is present
Dec 03 05:58:05.033 INFO running `"docker" "inspect" "e9bf6474485d1f5499cc7b78e72a9db924a05a677f64a374abb8db5e411446fa"`
Dec 03 05:58:05.145 INFO running `"docker" "rm" "-f" "e9bf6474485d1f5499cc7b78e72a9db924a05a677f64a374abb8db5e411446fa"`
Dec 03 05:58:05.244 INFO [stdout] e9bf6474485d1f5499cc7b78e72a9db924a05a677f64a374abb8db5e411446fa
